This is a misunderstanding. A computer is only as good at doing something as we program it to Lips Autism dont judge what you dont understand shirt . And it is implied in the very first game that there is a ‘human’ component to FTL jump calculations that is inherent in the system. This is during the opening scene when Joker makes a comment about how close to the mark with minimal drift he is on his Mass Relay jump and that it is better than the ‘good’ that the turian (I forget his name atm) declares it to be. And perhaps VI COULD do it if programed to do so, but take a look at all the Citadel VI’s. They are out right stupid.
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The AI your humanity has could do it no problem and so much faster than a human its not funny, but canon, there is a gap that must be filled by a Lips Autism dont judge what you dont understand shirt . Whether it is a programing limitation due to lack of ability to program it (possible but doubtful) or an intentional gap left to avoid giving a VI control over what could be turned into a devastating weapon (most likely) is moot. In canon, a sentient pilot is needed for a reason. Even Cerberus kept Edi locked out of those systems.